127 lines
3.0 KiB
VimL
127 lines
3.0 KiB
VimL
" Vim syntax file
|
|
" Language: Snakemake (extended from python.vim)
|
|
" Maintainer: Jay Hesselberth (jay.hesselberth@gmail.com)
|
|
" Last Change: 2020 Oct 6
|
|
"
|
|
" Usage
|
|
"
|
|
" copy to $HOME/.vim/syntax directory and
|
|
" copy to ftdetect/snakemake.vim to $HOME/.vim/ftdetect directory
|
|
"
|
|
" force coloring in a vim session with:
|
|
"
|
|
" :set syntax=snakemake
|
|
"
|
|
if exists("b:current_syntax")
|
|
finish
|
|
endif
|
|
|
|
" load settings from system python.vim (7.4)
|
|
source $VIMRUNTIME/syntax/python.vim
|
|
source $VIMRUNTIME/indent/python.vim
|
|
|
|
"
|
|
" Snakemake rules, as of version 5.8
|
|
"
|
|
"
|
|
" rule = "rule" (identifier | "") ":" ruleparams
|
|
" include = "include:" stringliteral
|
|
" workdir = "workdir:" stringliteral
|
|
" ni = NEWLINE INDENT
|
|
" ruleparams = [ni input] [ni output] [ni params] [ni message] [ni threads] [ni (run | shell)] NEWLINE snakemake
|
|
" input = "input" ":" parameter_list
|
|
" output = "output" ":" parameter_list
|
|
" params = "params" ":" parameter_list
|
|
" message = "message" ":" stringliteral
|
|
" threads = "threads" ":" integer
|
|
" resources = "resources" ":" parameter_list
|
|
" version = "version" ":" statement
|
|
" run = "run" ":" ni statement
|
|
" shell = "shell" ":" stringliteral
|
|
" singularity = "singularity" ":" stringliteral
|
|
" conda = "conda" ":" stringliteral
|
|
" shadow = "shadow" ":" stringliteral
|
|
" group = "group" ":" stringliteral
|
|
|
|
|
|
" general directives (e.g. input)
|
|
syn keyword pythonStatement
|
|
\ benchmark
|
|
\ conda
|
|
\ configfile
|
|
\ container
|
|
\ default_target
|
|
\ envmodules
|
|
\ group
|
|
\ include
|
|
\ input
|
|
\ localrule
|
|
\ localrules
|
|
\ log
|
|
\ message
|
|
\ notebook
|
|
\ onerror
|
|
\ onstart
|
|
\ onsuccess
|
|
\ output
|
|
\ params
|
|
\ priority
|
|
\ resources
|
|
\ ruleorder
|
|
\ run
|
|
\ scattergather
|
|
\ script
|
|
\ shadow
|
|
\ shell
|
|
\ singularity
|
|
\ snakefile
|
|
\ template_engine
|
|
\ threads
|
|
\ version
|
|
\ wildcard_constraints
|
|
\ wildcards
|
|
\ workdir
|
|
\ wrapper
|
|
|
|
" directives with a label (e.g. rule)
|
|
syn keyword pythonStatement
|
|
\ checkpoint
|
|
\ rule
|
|
\ subworkflow
|
|
\ nextgroup=pythonFunction skipwhite
|
|
|
|
" common snakemake objects
|
|
syn keyword pythonBuiltinObj
|
|
\ Paramspace
|
|
\ checkpoints
|
|
\ config
|
|
\ gather
|
|
\ rules
|
|
\ scatter
|
|
\ workflow
|
|
|
|
" snakemake functions
|
|
syn keyword pythonBuiltinFunc
|
|
\ ancient
|
|
\ directory
|
|
\ expand
|
|
\ multiext
|
|
\ pipe
|
|
\ protected
|
|
\ read_job_properties
|
|
\ service
|
|
\ temp
|
|
\ touch
|
|
\ unpack
|
|
|
|
" similar to special def and class treatment from python.vim, except
|
|
" parenthetical part of def and class
|
|
syn match pythonFunction
|
|
\ "\%(\%(rule\s\|subworkflow\s\|checkpoint\s\)\s*\)\@<=\h\w*" contained
|
|
|
|
syn sync match pythonSync grouphere NONE "^\s*\%(rule\|subworkflow\|checkpoint\)\s\+\h\w*\s*"
|
|
|
|
let b:current_syntax = "snakemake"
|
|
|
|
" vim:set sw=2 sts=2 ts=8 noet:
|